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1

Using a three-dimensional optical simulation to investigate uncertainty in image-based dimensional measurements

Dong, Yue, Hutchens, Thomas, Mullany, Brigid, Morse, Edward, Davies, Angela

Journal:

Optical Engineering

Year:

2014

Language:

english

File:

PDF, 1.33 MB

english, 2014

2

Chemoproteomic profiling of host and pathogen enzymes active in cholera

Hatzios, Stavroula K, Abel, Sören, Martell, Julianne, Hubbard, Troy, Sasabe, Jumpei, Munera, Diana, Clark, Lars, Bachovchin, Daniel A, Qadri, Firdausi, Ryan, Edward T, Davis, Brigid M, Weerapana, Eran

Journal:

Nature Chemical Biology

Year:

2016

Language:

english

File:

PDF, 1.05 MB

english, 2016

3

Erratum: Chemoproteomic profiling of host and pathogen enzymes active in cholera

Hatzios, Stavroula K, Abel, Sören, Martell, Julianne, Hubbard, Troy, Sasabe, Jumpei, Munera, Diana, Clark, Lars, Bachovchin, Daniel A, Qadri, Firdausi, Ryan, Edward T, Davis, Brigid M, Weerapana, Eran

Journal:

Nature Chemical Biology

Year:

2016

File:

PDF, 93 KB

2016

4

Unsupervised Learning Approach for Comparing Multiple Transposon Insertion Sequencing Studies

Hubbard, Troy P., D’Gama, Jonathan D., Billings, Gabriel, Davis, Brigid M., Waldor, Matthew K., Imperiale, Michael J.

Journal:

Year:

2019

Language:

english

File:

PDF, 1.21 MB

english, 2019

5

Characterization of cell lines established from human gastric-esophageal adenocarcinomas: Biologic phenotype and invasion potential

Nasser Altorki, Gary K. Schwartz, Maude Blundell, Brigid M. Davis, David P. Kelsen, Anthony P. Albino

Journal:

Year:

1993

Language:

english

File:

PDF, 1.04 MB

english, 1993

6

Strengthening the emergency healthcare system for mothers and children in The Gambia

Ramou Cole-Ceesay, Meena Cherian, Alieu Sonko, Nestor Shivute, Mamady Cham, Michael Davis, Famara Fatty, Susan Wieteska, Momodou Baro, Diane Watson, Barbara Phillips, Rhona MacDonald, Brigid Hayden, D

Journal:

Reproductive Health

Year:

2010

Language:

english

File:

PDF, 456 KB

english, 2010

7

Hfq is essential for Vibrio cholerae virulence and downregulates σE expression

Yanpeng Ding, Brigid M. Davis, Matthew K. Waldor

Journal:

Molecular Microbiology

Year:

2004

Language:

english

File:

PDF, 148 KB

english, 2004

8

CTXφ and Vibrio cholerae: exploring a newly recognized type of phage–host cell relationship

Sarah M. McLeod, Harvey H. Kimsey, Brigid M. Davis, Matthew K. Waldor

Journal:

Molecular Microbiology

Year:

2005

Language:

english

File:

PDF, 428 KB

english, 2005

9

Antimicrobial peptides activate the Vibrio choleraeσE regulon through an OmpU-dependent signalling pathway

Jyoti Mathur, Brigid M. Davis, Matthew K. Waldor

Journal:

Molecular Microbiology

Year:

2007

Language:

english

File:

PDF, 404 KB

english, 2007

10

RNase E-dependent processing stabilizes MicX, a Vibrio cholerae sRNA

Brigid M. Davis, Matthew K. Waldor

Journal:

Molecular Microbiology

Year:

2007

Language:

english

File:

PDF, 342 KB

english, 2007

11

Hfq negatively regulates type III secretion in EHEC and several other pathogens

Elizabeth A. Shakhnovich, Brigid M. Davis, Matthew K. Waldor

Journal:

Molecular Microbiology

Year:

2009

Language:

english

File:

PDF, 563 KB

english, 2009

12

Virulence of an emerging pathogenic lineage of Vibrio nigripulchritudo is dependent on two plasmids

Frédérique Le Roux, Yannick Labreuche, Brigid M. Davis, Naeem Iqbal, Sophie Mangenot, Cyrille Goarant, Didier Mazel, Matthew K. Waldor

Journal:

Environmental Microbiology

Year:

2011

Language:

english

File:

PDF, 420 KB

english, 2011

13

Mice lacking the myotonic dystrophy protein kinase develop a late onset progressive myopathy

Reddy, Sita, Smith, Daniel B. J., Rich, Mark M., Leferovich, John M., Reilly, Patricia, Davis, Brigid M., Tran, Khoa, Rayburn, Helen, Bronson, Roderick, Cros, Didier

Journal:

Nature Genetics

Year:

1996

File:

PDF, 1.34 MB

1996

14

A Novel Combination of Cisplatin, Irinotecan, and Capecitabine in Patients with Advanced Cancer

Michael Jefford, Michael Michael, Mark A. Rosenthal, Ian D. Davis, Michael Green, Bev McClure, Jennifer Smith, Brigid Waite, John Zalcberg

Journal:

Investigational New Drugs

Year:

2004

Language:

english

File:

PDF, 71 KB

english, 2004

15

Cerebral Protection by Lidocaine During Cardiac Operations: A Follow-Up Study

Simon J. Mitchell, Alan F. Merry, Christopher Frampton, Elaine Davies, Diana Grieve, Brigid P. Mills, Craig S. Webster, F. Paget Milsom, Timothy W. Willcox, Desmond F. Gorman

Journal:

The Annals of Thoracic Surgery

Year:

2009

Language:

english

File:

PDF, 151 KB

english, 2009

16

A mutagenesis genetic screen to identify zebrafish embryos with defects in vasculature development

Mariana Melani, Misato Fujita, Daniel Castranova, Andrew Davis, Aniket Gore, Matthew Swift, Young Ryun-Cha, Brigid D. Lo, Brant M. Weinstein

Journal:

Developmental Biology

Year:

2009

Language:

english

File:

PDF, 52 KB

english, 2009

17

Effect of adsorbed metal ions on the transport of Zn- and Ni-EDTA complexes in a sand and gravel aquifer

Douglas B. Kent, James A. Davis, Linda C.D. Anderson, Brigid A. Rea, Jennifer A. Coston

Journal:

Geochimica et Cosmochimica Acta

Year:

2002

Language:

english

File:

PDF, 463 KB

english, 2002

18

Bacteriophage–bacteriophage interactions in the evolution of pathogenic bacteria

E.Fidelma Boyd, Brigid M. Davis, Bianca Hochhut

Journal:

Trends in Microbiology

Year:

2001

Language:

english

File:

PDF, 66 KB

english, 2001

19

Filamentous phages linked to virulence of Vibrio cholerae

Brigid M Davis, Matthew K Waldor

Journal:

Current Opinion in Microbiology

Year:

2003

Language:

english

File:

PDF, 262 KB

english, 2003

20

Horizontal Gene Transfer: Linking Sex and Cell Fate

Davis, Brigid M., Waldor, Matthew K.

Journal:

Current Biology

Year:

2013

Language:

english

File:

PDF, 475 KB

english, 2013

21

Entering the era of bacterial epigenomics with single molecule real time DNA sequencing

Davis, Brigid M, Chao, Michael C, Waldor, Matthew K

Journal:

Current Opinion in Microbiology

Year:

2013

Language:

english

File:

PDF, 470 KB

english, 2013

22

Establishing polar identity in gram-negative rods

Davis, Brigid M, Waldor, Matthew K

Journal:

Current Opinion in Microbiology

Year:

2013

Language:

english

File:

PDF, 552 KB

english, 2013

23

A Vibrio parahaemolyticus T3SS Effector Mediates Pathogenesis by Independently Enabling Intestinal Colonization and Inhibiting TAK1 Activation

Zhou, Xiaohui, Gewurz, Benjamin E., Ritchie, Jennifer M., Takasaki, Kaoru, Greenfeld, Hannah, Kieff, Elliott, Davis, Brigid M., Waldor, Matthew K.

Journal:

Year:

2013

Language:

english

File:

PDF, 2.57 MB

english, 2013

24

Expansion of a CUG Trinucleotide Repeat in the 3′Untranslated Region of Myotonic Dystrophy Protein Kinase Transcripts Results in Nuclear Retention of Transcripts

Brigid M. Davis, Mila E. McCurrach, Krishan L. Taneja, Robert H. Singer and David E. Housman

Journal:

Proceedings of the National Academy of Sciences

Year:

1997

Language:

english

File:

PDF, 1.65 MB

english, 1997

25

Distinct pathways for modification of the bacterial cell wall by non-canonical D -amino acids

Cava, Felipe, de Pedro, Miguel A, Lam, Hubert, Davis, Brigid M, Waldor, Matthew K

Journal:

The EMBO Journal

Year:

2011

Language:

english

File:

PDF, 1.77 MB

english, 2011

26

Substrate specificity of an elongation-specific peptidoglycan endopeptidase and its implications for cell wall architecture and growth of Vibrio cholerae

Dörr, Tobias, Cava, Felipe, Lam, Hubert, Davis, Brigid M., Waldor, Matthew K.

Journal:

Molecular Microbiology

Year:

2013

Language:

english

File:

PDF, 939 KB

english, 2013

27

The V ibrio parahaemolyticus effector VopC mediates Cdc42-dependent invasion of cultured cells but is not required for pathogenicity in an animal model of infection

Okada, Ryu, Zhou, Xiaohui, Hiyoshi, Hirotaka, Matsuda, Shigeaki, Chen, Xiang, Akeda, Yukihiro, Kashimoto, Takashige, Davis, Brigid M., Iida, Tetsuya, Waldor, Matthew K., Kodama, Toshio

Journal:

Cellular Microbiology

Year:

2014

Language:

english

File:

PDF, 892 KB

english, 2014

28

Sequence tag–based analysis of microbial population dynamics

Abel, Sören, Abel zur Wiesch, Pia, Chang, Hsiao-Han, Davis, Brigid M, Lipsitch, Marc, Waldor, Matthew K

Journal:

Year:

2015

Language:

english

File:

PDF, 552 KB

english, 2015

29

Structural basis for the broad specificity of a new family of amino-acid racemases

Espaillat, Akbar, Carrasco-López, César, Bernardo-García, Noelia, Pietrosemoli, Natalia, Otero, Lisandro H., Álvarez, Laura, de Pedro, Miguel A., Pazos, Florencio, Davis, Brigid M., Waldor, Matthew K.

Journal:

Acta Crystallographica Section D Biological Crystallography

Year:

2014

Language:

english

File:

PDF, 2.77 MB

english, 2014

30

A D, D-carboxypeptidase is required for V ibrio cholerae halotolerance

Möll, Andrea, Dörr, Tobias, Alvarez, Laura, Davis, Brigid M., Cava, Felipe, Waldor, Matthew K.

Journal:

Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 1.13 MB

english, 2015

31

The Hydrophilic Translocator for Vibrio parahaemolyticus, T3SS2, Is Also Translocated

Zhou, Xiaohui, Ritchie, Jennifer M., Hiyoshi, Hirotaka, Iida, Tetsuya, Davis, Brigid M., Waldor, Matthew K., Kodama, Toshio, Fang, F. C.

Journal:

Infection and Immunity

Year:

2012

Language:

english

File:

PDF, 2.03 MB

english, 2012

32

Positioning sensor by combining photogrammetry, optical projection and a virtual camera model

Zheng, Benrui, Dong, Yue, Mullany, Brigid, Morse, Edward, Davies, Angela

Journal:

Measurement Science and Technology

Year:

2013

Language:

english

File:

PDF, 243 KB

english, 2013

33

A genome wide screen reveals that Vibrio cholerae phosphoenolpyruvate phosphotransferase system (PTS) modulates virulence gene expression

Wang, Qiyao, Millet, Yves A., Chao, Michael C., Sasabe, Jumpei, Davis, Brigid M., Waldor, Matthew K.

Journal:

Infection and Immunity

Year:

2015

Language:

english

File:

PDF, 4.07 MB

english, 2015

34

Regulatory Cross-Talk Links Vibrio cholerae Chromosome II Replication and Segregation

Yamaichi, Yoshiharu, Gerding, Matthew A., Davis, Brigid M., Waldor, Matthew K., Burkholder, William F.

Journal:

Year:

2011

Language:

english

File:

PDF, 2.00 MB

english, 2011

35

ARTIST: High-Resolution Genome-Wide Assessment of Fitness Using Transposon-Insertion Sequencing

Pritchard, Justin R., Chao, Michael C., Abel, Sören, Davis, Brigid M., Baranowski, Catherine, Zhang, Yanjia J., Rubin, Eric J., Waldor, Matthew K., Viollier, Patrick H.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.54 MB

english, 2014

36

Insights into Vibrio cholerae Intestinal Colonization from Monitoring Fluorescently Labeled Bacteria

Millet, Yves A., Alvarez, David, Ringgaard, Simon, von Andrian, Ulrich H., Davis, Brigid M., Waldor, Matthew K., Klose, Karl E.

Journal:

Year:

2014

Language:

english

File:

PDF, 4.89 MB

english, 2014

37

Endopeptidase-Mediated Beta Lactam Tolerance

Dörr, Tobias, Davis, Brigid M., Waldor, Matthew K., Mougous, Joseph D

Journal:

Year:

2015

Language:

english

File:

PDF, 882 KB

english, 2015

38

A Novel Peptidoglycan Binding Protein Crucial for PBP1A-Mediated Cell Wall Biogenesis in Vibrio cholerae

Dörr, Tobias, Lam, Hubert, Alvarez, Laura, Cava, Felipe, Davis, Brigid M., Waldor, Matthew K., Kearns, Daniel B.

Journal:

Year:

2014

Language:

english

File:

PDF, 5.92 MB

english, 2014

39

Inflammation and Disintegration of Intestinal Villi in an Experimental Model for Vibrio parahaemolyticus-Induced Diarrhea

Ritchie, Jennifer M., Rui, Haopeng, Zhou, Xiaohui, Iida, Tetsuya, Kodoma, Toshio, Ito, Susuma, Davis, Brigid M., Bronson, Roderick T., Waldor, Matthew K., Valdivia, Raphael H.

Journal:

Year:

2012

Language:

english

File:

PDF, 9.06 MB

english, 2012

40

SPIE Proceedings [SPIE SPIE Optical Engineering + Applications - San Diego, California, United States (Sunday 17 August 2014)] Remote Sensing System Engineering V - An optical positioning sensor by combining optical projection and a virtual camera model

Ardanuy, Philip E., Puschell, Jeffery J., Zheng, Benrui, Dong, Yue, Mullany, Brigid, Morse, Edward, Davies, Angela

Year:

2014

Language:

english

File:

PDF, 672 KB

english, 2014

41

Molecular Dissection of the Essential Features of the Origin of Replication of the Second Vibrio cholerae Chromosome

Gerding, Matthew A., Chao, Michael C., Davis, Brigid M., Waldor, Matthew K.

Journal:

Year:

2015

Language:

english

File:

PDF, 2.76 MB

english, 2015

42

A cell wall damage response mediated by a sensor kinase/response regulator pair enables beta-lactam tolerance

Dörr, Tobias, Alvarez, Laura, Delgado, Fernanda, Davis, Brigid M., Cava, Felipe, Waldor, Matthew K.

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.13 MB

english, 2015

43

The design and analysis of transposon insertion sequencing experiments

Chao, Michael C., Abel, Sören, Davis, Brigid M., Waldor, Matthew K.

Journal:

Nature Reviews Microbiology

Year:

2016

Language:

english

File:

PDF, 544 KB

english, 2016

44

Aminoacyl-Transfer RNA Synthetase Deficiency Promotes Angiogenesis via the Unfolded Protein Response Pathway

Castranova, Daniel, Davis, Andrew E., Lo, Brigid D., Miller, Mayumi F., Paukstelis, Paul J., Swift, Matthew R., Pham, Van N., Torres-Vázquez, Jesús, Bell, Kameha, Shaw, Kenna M., Kamei, Makoto, Weinst

Journal:

Arteriosclerosis Thrombosis and Vascular Biology

Year:

2016

Language:

english

File:

PDF, 13.69 MB

english, 2016

45

Genetic analysis of Vibrio parahaemolyticus intestinal colonization

Hubbard, Troy P., Chao, Michael C., Abel, Sören, Blondel, Carlos J., Abel zur Wiesch, Pia, Zhou, Xiaohui, Davis, Brigid M., Waldor, Matthew K.

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1022 KB

english, 2016

46

A transposon screen identifies genetic determinants of Vibrio cholerae resistance to high molecular weight antibiotics

Dörr, Tobias, Delgado, Fernanda, Umans, Benjamin, Gerding, Matthew A., Davis, Brigid M., Waldor, Matthew K.

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2016

Language:

english

File:

PDF, 2.44 MB

english, 2016

47

Using Optical Projection in Close-range Photogrammetry for 6DOF Sensor Positioning

Zheng, Benrui, Dong, Yue, Davies, Angela, Mullany, Brigid, Morse, Edward

Journal:

Photogrammetric Engineering & Remote Sensing

Year:

2013

Language:

english

File:

PDF, 2.23 MB

english, 2013

48

RpoS and quorum sensing control expression and polar localization of V ibrio cholerae chemotaxis cluster III proteins in vitro and in vivo

Ringgaard, Simon, Hubbard, Troy, Mandlik, Anjali, Davis, Brigid M., Waldor, Matthew K.

Journal:

Molecular Microbiology

Year:

2015

Language:

english

File:

PDF, 13.49 MB

english, 2015

49

CRISPR/Cas9 Screens Reveal Requirements for Host Cell Sulfation and Fucosylation in Bacterial Type III Secretion System-Mediated Cytotoxicity

Blondel, Carlos J., Park, Joseph S., Hubbard, Troy P., Pacheco, Alline R., Kuehl, Carole J., Walsh, Michael J., Davis, Brigid M., Gewurz, Benjamin E., Doench, John G., Waldor, Matthew K.

Journal:

Cell Host & Microbe

Year:

2016

Language:

english

File:

PDF, 3.43 MB

english, 2016

50

Interplay between microbial d-amino acids and host d-amino acid oxidase modifies murine mucosal defence and gut microbiota

Sasabe, Jumpei, Miyoshi, Yurika, Rakoff-Nahoum, Seth, Zhang, Ting, Mita, Masashi, Davis, Brigid M., Hamase, Kenji, Waldor, Matthew K.

Journal:

Nature Microbiology

Year:

2016

Language:

english

File:

PDF, 1.51 MB

english, 2016